2H56
Crystal structure of DNA-3-methyladenine glycosidase (10174367) from Bacillus halodurans at 2.55 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-09-10 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0163, 0.9798 |
Spacegroup name | P 65 |
Unit cell lengths | 141.752, 141.752, 85.949 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.400 - 2.550 |
R-factor | 0.198 |
Rwork | 0.196 |
R-free | 0.24600 |
Structure solution method | MAD |
RMSD bond length | 0.014 |
RMSD bond angle | 1.418 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.420 | 46.400 | 2.630 |
High resolution limit [Å] | 2.540 | 5.440 | 2.540 |
Rmerge | 0.091 | 0.038 | 0.390 |
Number of reflections | 31756 | 3403 | 2793 |
<I/σ(I)> | 15.62 | 40.4 | 2 |
Completeness [%] | 93.4 | 99.8 | 86.1 |
Redundancy | 6.49 | 7.9 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP, NANODROP | 7.1 | 277 | 0.2M NaF, 20.0% PEG-3350, No Buffer, pH 7.1, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K |