2DUP
Crystal structure of VIP36 exoplasmic/lumenal domain, metal-free form
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
| Synchrotron site | Photon Factory |
| Beamline | AR-NW12A |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2005-12-02 |
| Detector | ADSC QUANTUM 210 |
| Wavelength(s) | 1.0000 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 171.000, 45.200, 117.100 |
| Unit cell angles | 90.00, 132.60, 90.00 |
Refinement procedure
| Resolution | 20.000 - 2.100 |
| R-factor | 0.228 |
| Rwork | 0.225 |
| R-free | 0.27800 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2duo |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.336 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.180 |
| High resolution limit [Å] | 2.100 | 2.100 |
| Rmerge | 0.083 | 0.314 |
| Number of reflections | 36474 | |
| <I/σ(I)> | 13.4 | 3.7 |
| Completeness [%] | 93.7 | 78.9 |
| Redundancy | 3.5 | 3.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP, SOAKING | 6.5 | 277 | Crystallization: 15% PEG4000, 1.5M NaCl, 0.1M MES (pH6.5), 10mM EDTA, VAPOR DIFFUSION, HANGING DROP, SOAKING, temperature 277K |
