Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2BDZ

Mexicain from Jacaratia mexicana

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsBRUKER
Temperature [K]100
Detector technologyCCD
Collection date2003-09-26
DetectorNonius Kappa CCD
Spacegroup nameP 1 21 1
Unit cell lengths57.356, 90.454, 80.391
Unit cell angles90.00, 92.64, 90.00
Refinement procedure
Resolution40.800 - 2.100
Rwork0.177
R-free0.23800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)The initial model was calculated using the SWISS-MODEL server using ProModII for modelling and GROMOS96 for energy minimization (Schwede et al. 2000). Initial models pdb I.Ds.: 1yal 1gec 1ppo 1meg and 1pci
RMSD bond length0.012
RMSD bond angle1.092
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (refmac_5.2.0005)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.8002.180
High resolution limit [Å]2.1002.100
Rmerge0.0950.296
Number of reflections47249
<I/σ(I)>17.2713.495
Completeness [%]99.397.1
Redundancy5.93.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP1029320 % (w/v) PEGl 6000, 0.1 M citrate, 15 % (v/v) ethanolamine, pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon