Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YDC

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, soaked with GTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX II BEAMLINE I911-2
Synchrotron siteMAX II
BeamlineI911-2
Temperature [K]100
Detector technologyCCD
Collection date2010-05-15
DetectorMARRESEARCH MAR165
Spacegroup nameP 21 21 21
Unit cell lengths41.890, 46.430, 106.490
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.946 - 2.050
R-factor0.2041
Rwork0.202
R-free0.24830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xmi
RMSD bond length0.003
RMSD bond angle0.762
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.100
High resolution limit [Å]2.0502.050
Rmerge0.0801.080
Number of reflections13618
<I/σ(I)>15.662.18
Completeness [%]99.9100
Redundancy6.96.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
13.5CRYSTALLIZATION: 50 MM NA-CITRATE PH 3.5 & 30 % PEG 3000, SOAKING: 50 MM NA-CITRATE PH 3.5, 35 % PEG 1500 & 20 MM GTP FOR 3 H

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon