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2YB4

Structure of an amidohydrolase from Chromobacterium violaceum (EFI target EFI-500202) with bound SO4, no metal

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]93
Detector technologyIMAGE PLATE
DetectorRIGAKU RAXIS IV
Spacegroup nameP 21 21 21
Unit cell lengths40.070, 46.530, 130.490
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution31.775 - 2.200
R-factor0.1735
Rwork0.170
R-free0.23270
Structure solution methodSIRAS
Starting model (for MR)NONE
RMSD bond length0.006
RMSD bond angle1.053
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.0002.320
High resolution limit [Å]2.2002.200
Rmerge0.1000.260
Number of reflections12953
<I/σ(I)>10.34.8
Completeness [%]99.7100
Redundancy3.83.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
16.1PROTEIN (15 MG/ML IN 10 MM HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL) ADDED TO 25% PEG 3350, 100 MM BIS-TRIS PH 6.1, 200 MM AMSO4. CRYOSOLUTION WAS RESERVOIR WITH 20% ETHYLENE GLYCOL

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PDB entries from 2024-05-15

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