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2Y8A

VIM-7 with Oxidised. Structural and computational investigations of VIM-7: Insights into the substrate specificity of VIM metallo-beta- lactamases

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyCCD
Collection date2010-02-15
DetectorADSC CCD
Spacegroup nameP 43
Unit cell lengths70.138, 70.138, 47.529
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 2.330
R-factor0.19338
Rwork0.187
R-free0.25405
Structure solution methodOTHER
Starting model (for MR)NONE
RMSD bond length0.009
RMSD bond angle1.106
Data reduction softwareXDS
Data scaling softwareXDS
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.460
High resolution limit [Å]2.3302.330
Rmerge0.1100.500
Number of reflections10017
<I/σ(I)>8.12.2
Completeness [%]99.899.5
Redundancy4.53.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1522.5-23.5% POLYETHYLENE GLYCOL MONOMETHYL ETHERS (PEG MME) 2K, 0.1 M CALCIUM ACETATE, 0.1 M SODIUM CACODYLATE PH 5.0, 8 MM BETA-MERCAPTOETHANOL

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PDB entries from 2024-05-15

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