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2VS1

The crystal structure of Pyrococcus abyssi tRNA (uracil-54, C5)- methyltransferase in complex with S-adenosyl-L-homocysteine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameC 1 2 1
Unit cell lengths99.529, 100.415, 55.737
Unit cell angles90.00, 111.61, 90.00
Refinement procedure
Resolution68.040 - 2.100
R-factor0.188
Rwork0.185
R-free0.25100
Structure solution methodMAD
Starting model (for MR)NONE
RMSD bond length0.029
RMSD bond angle2.342
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareautoSHARP
Refinement softwareREFMAC (5.4.0069)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.0002.210
High resolution limit [Å]2.1002.100
Rmerge0.0500.400
Number of reflections28990
<I/σ(I)>193
Completeness [%]97.496.4
Redundancy3.63.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
115% PEG 8000, 0.05 M AMMONIUM SULFATE, 0.1 M SODIUM CITRATE PH 5.6

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PDB entries from 2024-05-15

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