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2R2D

Structure of a quorum-quenching lactonase (AiiB) from Agrobacterium tumefaciens

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-1
Synchrotron siteSSRL
BeamlineBL9-1
Temperature [K]200
Wavelength(s)0.97946
Spacegroup nameP 1 21 1
Unit cell lengths79.146, 158.033, 80.439
Unit cell angles90.00, 104.48, 90.00
Refinement procedure
Resolution18.100 - 1.750
R-factor0.16169
Rwork0.159
R-free0.21267
Structure solution methodSAD
RMSD bond length0.014
RMSD bond angle1.526
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareSOLVE
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]79.0601.810
High resolution limit [Å]1.7501.750
Rmerge0.0620.606
Number of reflections185201
<I/σ(I)>16.61.1
Completeness [%]96.879.1
Redundancy2.92.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP3.529835% glycerol anhydrous and 0.26 M ammonium dihydrogen phosphate, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

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PDB entries from 2025-06-11

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