2Q5G
Ligand binding domain of PPAR delta receptor in complex with a partial agonist
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 5.0.3 |
| Synchrotron site | ALS |
| Beamline | 5.0.3 |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2006-02-04 |
| Detector | ADSC QUANTUM 4 |
| Wavelength(s) | 1.00 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.577, 65.603, 101.149 |
| Unit cell angles | 90.00, 124.05, 90.00 |
Refinement procedure
| Resolution | 53.730 - 2.700 |
| R-factor | 0.229 |
| Rwork | 0.225 |
| R-free | 0.30500 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2gwx |
| RMSD bond length | 0.014 |
| RMSD bond angle | 1.625 |
| Data reduction software | d*TREK |
| Data scaling software | d*TREK (9.4LDz) |
| Phasing software | PHASES |
| Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 53.730 | 53.730 | 2.800 |
| High resolution limit [Å] | 2.700 | 5.810 | 2.700 |
| Rmerge | 0.099 | 0.047 | 0.373 |
| Total number of observations | 4299 | 4182 | |
| Number of reflections | 16233 | ||
| <I/σ(I)> | 6.3 | 13.8 | 2.1 |
| Completeness [%] | 95.7 | 89.3 | 98.6 |
| Redundancy | 2.53 | 2.61 | 2.47 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |






