2Q5G
Ligand binding domain of PPAR delta receptor in complex with a partial agonist
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2006-02-04 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.00 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 112.577, 65.603, 101.149 |
Unit cell angles | 90.00, 124.05, 90.00 |
Refinement procedure
Resolution | 53.730 - 2.700 |
R-factor | 0.229 |
Rwork | 0.225 |
R-free | 0.30500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2gwx |
RMSD bond length | 0.014 |
RMSD bond angle | 1.625 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.4LDz) |
Phasing software | PHASES |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 53.730 | 53.730 | 2.800 |
High resolution limit [Å] | 2.700 | 5.810 | 2.700 |
Rmerge | 0.099 | 0.047 | 0.373 |
Total number of observations | 4299 | 4182 | |
Number of reflections | 16233 | ||
<I/σ(I)> | 6.3 | 13.8 | 2.1 |
Completeness [%] | 95.7 | 89.3 | 98.6 |
Redundancy | 2.53 | 2.61 | 2.47 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |