2OYQ
Crystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analog
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 23-ID-D |
| Synchrotron site | APS |
| Beamline | 23-ID-D |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2006-08-03 |
| Detector | MARMOSAIC 300 mm CCD |
| Wavelength(s) | 0.99187 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 132.590, 123.478, 164.331 |
| Unit cell angles | 90.00, 96.22, 90.00 |
Refinement procedure
| Resolution | 30.000 - 2.860 |
| R-factor | 0.23416 |
| Rwork | 0.228 |
| R-free | 0.29420 |
| Structure solution method | Isomorphous Replacement |
| Starting model (for MR) | 1RV2 |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.101 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | CNS |
| Refinement software | REFMAC |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 30.000 | 2.960 |
| High resolution limit [Å] | 2.860 | 2.860 |
| Rmerge | 0.087 | 0.609 |
| Number of reflections | 121231 | |
| <I/σ(I)> | 10.7 | 2 |
| Completeness [%] | 99.6 | 97.3 |
| Redundancy | 4.4 | 3.7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | PEG 2000 MME, sodium acetate, magnesium sulfate, beta-mercaptoethanol, HEPES 7.5, glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | PEG 2000 | ||
| 10 | 1 | 2 | HEPES | ||
| 2 | 1 | 1 | sodium acetate | ||
| 3 | 1 | 1 | magnesium sulfate | ||
| 4 | 1 | 1 | beta-mercaptoethanol | ||
| 5 | 1 | 1 | HEPES | ||
| 6 | 1 | 1 | glycerol | ||
| 7 | 1 | 2 | PEG 2000 | ||
| 8 | 1 | 2 | sodium acetate | ||
| 9 | 1 | 2 | magnesium sulfate |
