Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2O5C

Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glucose pH 5.5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]100
Detector technologyCCD
Collection date2003-01-15
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9479
Spacegroup nameP 43 21 2
Unit cell lengths102.210, 102.210, 443.750
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.147 - 2.350
R-factor0.209
Rwork0.207
R-free0.24500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1d6m 1i7d
RMSD bond length0.010
RMSD bond angle1.163
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareAMoRE
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.1472.410
High resolution limit [Å]2.3502.350
Rmerge0.0500.215
Total number of observations9173
Number of reflections95028
<I/σ(I)>10.43.6
Completeness [%]96.174.2
Redundancy3.61.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52951.5 M (NH4)SO4, 0.1M Sodium citrate, 0.5 M NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111(NH4)SO4
211Sodium citrate
311NaCl
411HOH
512(NH4)SO4
612Sodium citrate
712NaCl
812HOH

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon