2GYX
Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU RU200 |
| Temperature [K] | 105 |
| Detector technology | IMAGE PLATE |
| Collection date | 2006-02-10 |
| Detector | RIGAKU RAXIS IV |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 24.380, 40.102, 65.627 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 8.000 - 1.860 |
| R-factor | 0.23 |
| R-free | 0.32700 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.025 |
| Data reduction software | DENZO |
| Phasing software | CNS |
| Refinement software | SHELXL-97 |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 25.000 | 1.930 |
| High resolution limit [Å] | 1.860 | 1.860 |
| Rmerge | 0.043 | 0.214 |
| Number of reflections | 5536 | |
| <I/σ(I)> | 35.9306 | 4.3099 |
| Completeness [%] | 94.7 | 91.3 |
| Redundancy | 2.85 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | MAGNESIUM CHLORIDE, MPD, DNA, COMPOUND DB 884, SODIUM CACODYLATE BUFFER, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.00 |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | MAGNESIUM CHLORIDE | ||
| 2 | 1 | 1 | MPD | ||
| 3 | 1 | 1 | SODIUM CACODYLATE | ||
| 4 | 1 | 1 | H2O | ||
| 5 | 1 | 2 | MAGNESIUM CHLORIDE | ||
| 6 | 1 | 2 | MPD | ||
| 7 | 1 | 2 | SODIUM CACODYLATE |
