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1ZF2

Four-stranded DNA Holliday Junction (CCC)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-ID-B
Synchrotron siteAPS
Beamline14-ID-B
Temperature [K]103
Detector technologyCCD
Collection date2004-02-26
DetectorMARRESEARCH
Wavelength(s)0.827
Spacegroup nameC 1 2 1
Unit cell lengths64.960, 24.710, 36.760
Unit cell angles90.00, 110.69, 90.00
Refinement procedure
Resolution16.000 - 1.950
R-factor0.231
Rwork0.231
R-free0.27300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)NDB ENTRY UD0028
RMSD bond length0.009
RMSD bond angle1.300
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareEPMR
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]16.0002.020
High resolution limit [Å]1.8801.880
Rmerge0.1030.335
Number of reflections3883
<I/σ(I)>82.2
Completeness [%]88.965.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7298Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
1VAPOR DIFFUSION, SITTING DROP7298Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111Na Cacodylate
1021Na Cacodylate
1221CaCl2
1321Spermine
1421MPD
1521H2O
1622Na Cacodylate
1722CaCl2
1822MPD
1922H2O
211CaCl2
311Spermine
411MPD
511H2O
612Na Cacodylate
712CaCl2
812MPD
912H2O

221716

PDB entries from 2024-06-26

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