1YXO
Crystal Structure of pyridoxal phosphate biosynthetic protein PdxA PA0593
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-D |
Synchrotron site | APS |
Beamline | 14-BM-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-06-25 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.98046 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.259, 59.307, 199.111 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.680 - 2.010 |
R-factor | 0.198 |
Rwork | 0.198 |
R-free | 0.24300 |
Structure solution method | MAD |
Starting model (for MR) | none |
RMSD bond length | 0.005 |
RMSD bond angle | 1.300 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.000 | 2.080 |
High resolution limit [Å] | 2.010 | 2.010 |
Rmerge | 0.071 | 0.201 |
Number of reflections | 42938 | |
<I/σ(I)> | 8.5 | 6.05 |
Completeness [%] | 98.1 | 97.8 |
Redundancy | 6.6 | 5.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | PEG3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | PEG3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | PEG3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |