1YGP
PHOSPHORYLATED FORM OF YEAST GLYCOGEN PHOSPHORYLASE WITH PHOSPHATE BOUND IN THE ACTIVE SITE.
Experimental procedure
| Detector technology | IMAGE PLATE |
| Collection date | 1995-04-08 |
| Detector | RIGAKU RAXIS |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 103.910, 143.930, 169.260 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 6.000 - 2.800 |
| R-factor | 0.179 |
| Rwork | 0.179 |
| R-free | 0.23900 |
| RMSD bond length | 0.018 |
| RMSD bond angle | 2.870 |
| Data reduction software | R-AXIS |
| Phasing software | X-PLOR (3.1) |
| Refinement software | X-PLOR (3.1) |
Data quality characteristics
| Overall | Outer shell | |
| High resolution limit [Å] | 2.800 * | 2.800 * |
| Rmerge | 0.105 | |
| Total number of observations | 247322 * | |
| Number of reflections | 50707 | |
| Completeness [%] | 72.0 | |
| Redundancy | 5 | 0.043 * |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion, hanging drop * | 6 * | 18 * | used to seeding, Lin, K., (1997) Structure, 5, 1511. * |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | protein | 32 (mg/ml) | |
| 10 | 1 | reservoir | Bis-Tris | 100 (mM) | |
| 11 | 1 | reservoir | 50 (mM) | ||
| 12 | 1 | reservoir | Glc-1-P | 50 (mM) | |
| 13 | 1 | reservoir | ammonium sulfate | 400 (mM) | |
| 14 | 1 | reservoir | PEG4000 | 4.5 (%) | |
| 15 | 1 | drop | reservoir | equal volume of drop solution | |
| 2 | 1 | drop | sodium succinate | 130 (mM) | |
| 3 | 1 | drop | DTT | 2 (mM) | |
| 4 | 1 | drop | EDTA | 0.2 (mM) | |
| 5 | 1 | drop | leupeptin | 0.001 (mg/ml) | |
| 6 | 1 | drop | aprotonin | 0.001 (mg/ml) | |
| 7 | 1 | drop | pepstatin A | 0.001 (mg/ml) | |
| 8 | 1 | drop | PMSF | 0.5 (mM) | |
| 9 | 1 | drop | sodium azide | 0.02 (%) |






