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1X3W

Structure of a peptide:N-glycanase-Rad23 complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-5A
Synchrotron sitePhoton Factory
BeamlineBL-5A
Temperature [K]93
Wavelength(s)0.9794
Spacegroup nameP 31 2 1
Unit cell lengths129.235, 129.235, 128.494
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 3.000
R-factor0.24516
Rwork0.244
R-free0.27418
Structure solution methodSAD
RMSD bond length0.015
RMSD bond angle1.688
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (5.2.0005)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.100
High resolution limit [Å]3.0003.000
Rmerge0.320
Number of reflections25391
Completeness [%]94.468.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION6291sodium chloride, MES, pH 6, VAPOR DIFFUSION, temperature 291K

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PDB entries from 2024-10-09

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