1VJ2
Crystal structure of a novel family of manganese-containing cupin (tm1459) from thermotoga maritima at 1.65 A resolution
Replaces: 1O5NExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-01-09 |
Detector | ADSC QUANTUM 315 |
Spacegroup name | P 32 |
Unit cell lengths | 52.550, 52.550, 96.267 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.070 - 1.650 |
R-factor | 0.21015 |
Rwork | 0.208 |
R-free | 0.24900 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1fi2 |
RMSD bond length | 0.018 |
RMSD bond angle | 1.650 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA (4.2)) |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.130 | 1.740 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.067 * | 0.577 * |
Total number of observations | 124395 * | |
Number of reflections | 35029 | |
<I/σ(I)> | 15.6 | 1.9 |
Completeness [%] | 97.8 | 87.6 |
Redundancy | 3.6 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.9 * | 293 | 50% (v/v) PEG-200, 0.1M Phosphate-citrate pH 4.2 0.2M NaCl, pH 5.2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Tris | 20 (mM) | pH7.9 |
2 | 1 | drop | 150 (mM) | ||
3 | 1 | drop | TCEP | 0.25 (mM) | |
4 | 1 | drop | protein | 10 (mg/ml) | |
5 | 1 | reservoir | PEG200 | 50 (%) | |
6 | 1 | reservoir | 0.2 (M) | ||
7 | 1 | reservoir | sodium phosphate-citrate | 0.1 (M) | pH4.2 |