1VDM
Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-09-25 |
Detector | RIGAKU RAXIS V |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.603, 157.350, 170.631 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.550 - 2.500 |
R-factor | 0.211 |
Rwork | 0.209 |
R-free | 0.24100 |
Structure solution method | MIR |
RMSD bond length | 0.008 |
RMSD bond angle | 1.300 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.129 | 0.785 |
Number of reflections | 99412 | |
<I/σ(I)> | 8 | 3.23 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.3 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 4.4 | 291 | NaCl, pH 4.4, microbatch, temperature 291K |
1 | MICROBATCH | 4.4 | 291 | NaCl, pH 4.4, microbatch, temperature 291K |
1 | MICROBATCH | 4.4 | 291 | NaCl, pH 4.4, microbatch, temperature 291K |