1VDH
Structure-based functional identification of a novel heme-binding protein from thermus thermophilus HB8
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-12-03 |
Detector | RIGAKU JUPITER 210 |
Wavelength(s) | 0.9791, 0.9797, 1.020 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 99.738, 123.136, 131.439 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.990 - 2.000 |
R-factor | 0.188 |
Rwork | 0.188 |
R-free | 0.21800 |
Structure solution method | MAD |
RMSD bond length | 0.006 |
RMSD bond angle | 1.200 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.090 | 0.165 |
Number of reflections | 107812 | |
<I/σ(I)> | 15.7 | 8.2 |
Completeness [%] | 98.4 | 99.6 |
Redundancy | 4.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.4 | 293 | 30% ethylene glycol, 0.1M sodium acetate, pH 4.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
1 | VAPOR DIFFUSION, SITTING DROP | 4.4 | 293 | 30% ethylene glycol, 0.1M sodium acetate, pH 4.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K |