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1VCP

SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM I)

Experimental procedure
Detector technologyAREA DETECTOR
DetectorSIEMENS
Spacegroup nameP 1 21 1
Unit cell lengths39.140, 176.220, 40.210
Unit cell angles90.00, 110.36, 90.00
Refinement procedure
Resolution6.000 - 3.000
R-factor0.157
Rwork0.157
RMSD bond length0.013
RMSD bond angle1.700
Data reduction softwareXDS
Phasing softwareX-PLOR
Refinement softwareX-PLOR
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]10.000

*

High resolution limit [Å]3.000

*

3.000

*

Rmerge0.0760.118

*

Number of reflections67471933

*

Completeness [%]66.044.3

*

Redundancy2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

8.3

*

KHGI4 WAS REQUIRED TO OBTAIN BIG CRYSTALS. EACH OF THREE MONOMERS OF THE SEMLIKI FOREST VIRUS CORE PROTEIN BIND ONE MERCURY ATOM. THE HG ATOM FORMS A S-HG-S BOND WITH CYS 119 AND CYS 134. IN THE NATIVE STRUCTURE THERE IS A DISULFIDE BRIDGE BETWEEN CYS 119 AND CYS 134. THE S-HG DISTANCE WAS RESTRAINED TO 2.45 ANGSTROMS WHILE THE BOND ANGLE OF S-HG-S WAS RESTRAINED TO 180 DEGREES.
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein5 (mg/ml)
21drop5 (mM)
31dropPEG80003-5 (%(w/v))
41dropTris-HCl100-150 (mM)
51reservoirPEG80006-10 (%(w/v))
61reservoirTris-HCl200-300 (mM)

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PDB entries from 2024-07-24

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