1VCP
SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM I)
Experimental procedure
Detector technology | AREA DETECTOR |
Detector | SIEMENS |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.140, 176.220, 40.210 |
Unit cell angles | 90.00, 110.36, 90.00 |
Refinement procedure
Resolution | 6.000 - 3.000 |
R-factor | 0.157 |
Rwork | 0.157 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.700 |
Data reduction software | XDS |
Phasing software | X-PLOR |
Refinement software | X-PLOR |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 10.000 * | |
High resolution limit [Å] | 3.000 * | 3.000 * |
Rmerge | 0.076 | 0.118 * |
Number of reflections | 6747 | 1933 * |
Completeness [%] | 66.0 | 44.3 * |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 8.3 * | KHGI4 WAS REQUIRED TO OBTAIN BIG CRYSTALS. EACH OF THREE MONOMERS OF THE SEMLIKI FOREST VIRUS CORE PROTEIN BIND ONE MERCURY ATOM. THE HG ATOM FORMS A S-HG-S BOND WITH CYS 119 AND CYS 134. IN THE NATIVE STRUCTURE THERE IS A DISULFIDE BRIDGE BETWEEN CYS 119 AND CYS 134. THE S-HG DISTANCE WAS RESTRAINED TO 2.45 ANGSTROMS WHILE THE BOND ANGLE OF S-HG-S WAS RESTRAINED TO 180 DEGREES. |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5 (mg/ml) | |
2 | 1 | drop | 5 (mM) | ||
3 | 1 | drop | PEG8000 | 3-5 (%(w/v)) | |
4 | 1 | drop | Tris-HCl | 100-150 (mM) | |
5 | 1 | reservoir | PEG8000 | 6-10 (%(w/v)) | |
6 | 1 | reservoir | Tris-HCl | 200-300 (mM) |