1VC6
Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 8.2.2 |
| Synchrotron site | ALS |
| Beamline | 8.2.2 |
| Temperature [K] | 80 |
| Detector technology | CCD |
| Collection date | 2003-07-01 |
| Detector | ADSC QUANTUM 4 |
| Wavelength(s) | 1.0332 |
| Spacegroup name | H 3 2 |
| Unit cell lengths | 109.159, 109.159, 190.603 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 42.350 - 2.800 |
| R-factor | 0.247 |
| Rwork | 0.247 |
| R-free | 0.28400 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.300 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | AMoRE |
| Refinement software | CNS (1.1) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 42.350 | 2.980 |
| High resolution limit [Å] | 2.800 | 2.800 |
| Number of reflections | 10908 | |
| Completeness [%] | 98.8 | 97.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | Imidazole, Mg2+, NaCl, MPD, Sodium Cacodylate, Spermine-HCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | Imidazole | ||
| 10 | 1 | 2 | MPD | ||
| 11 | 1 | 2 | Sodium Cacodylate | ||
| 2 | 1 | 1 | Mg2+ | ||
| 3 | 1 | 1 | NaCl | ||
| 4 | 1 | 1 | MPD | ||
| 5 | 1 | 1 | Sodium Cacodylate | ||
| 6 | 1 | 1 | Spermine-HCl | ||
| 7 | 1 | 2 | Imidazole | ||
| 8 | 1 | 2 | Mg2+ | ||
| 9 | 1 | 2 | NaCl |
