Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1VB0

Atomic resolution structure of atratoxin-b, one short-chain neurotoxin from Naja atra

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyCCD
Wavelength(s)0.916
Spacegroup nameP 41 21 2
Unit cell lengths48.463, 48.463, 44.133
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 0.920
Rwork0.114
R-free0.13280
Structure solution methodAB INITIO
Starting model (for MR)1onj
RMSD bond length0.015
RMSD bond angle0.040
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0000.940
High resolution limit [Å]0.9200.920
Rmerge0.0750.210
Number of reflections36907
Completeness [%]99.492
Redundancy12.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.5293Tris_HCl, ammonium sulfate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon