1V7R
Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-11-12 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 79.013, 93.188, 55.621 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 * - 1.400 |
R-factor | 0.202 |
Rwork | 0.202 |
R-free | 0.22200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1b78 |
RMSD bond length | 0.004 * |
RMSD bond angle | 1.150 * |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.450 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.050 | 0.272 * |
Total number of observations | 286969 * | |
Number of reflections | 40686 * | |
Completeness [%] | 99.8 * | 100 |
Redundancy | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.1 | 291 * | 1.6M Tris sodium citrate, pH 5.1, Microbatch, temperature 295K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 20.4 (mg/ml) | |
2 | 1 | reservoir | sodium citrate | 1.6 (M) | pH5.1 |