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1V4K

Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima S77F mutant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU RAXIS IV
Wavelength(s)1.54
Spacegroup nameI 4 2 2
Unit cell lengths151.828, 151.828, 64.945
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 2.450
Rwork0.211
R-free0.28020
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1v4e
RMSD bond length0.005
RMSD bond angle1.163
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.540
High resolution limit [Å]2.4502.450
Rmerge0.0530.486
Total number of observations123482

*

Number of reflections13817
<I/σ(I)>35.92.9
Completeness [%]96.882
Redundancy8.94
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5298Na+Hepes, lithium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21dropTriton X-1000.1 (%)
31reservoirsodium HEPES0.1 (M)pH7.5
41reservoir1.5 (M)

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PDB entries from 2025-06-18

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