1UVR
Structure of human PDK1 kinase domain in complex with BIM-8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2003-02-15 |
Detector | ADSC CCD |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 123.682, 123.682, 47.789 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.000 * - 2.800* |
R-factor | 0.17642 |
Rwork | 0.195 |
R-free | 0.24500 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1h1w |
RMSD bond length | 0.007 * |
RMSD bond angle | 1.660 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.138 | 0.518 |
Total number of observations | 32999 * | |
Number of reflections | 9493 | 915 * |
<I/σ(I)> | 8.5 | 2 |
Completeness [%] | 90.5 | 90.3 |
Redundancy | 3.5 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 7.75 * | 2.0 M AMMONIUM SULPHATE, 0.1 M TRIS-HCL PH 7.75 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | ammonium sulfate | 2.0 (M) | |
2 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH7.75 |
3 | 1 | drop | ethanol | 30 (%) | |
4 | 1 | drop | protein | 8.5 (mg/ml) |