1UMR
Crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of Crotalus durissus terrificus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | MARRESEARCH |
Spacegroup name | I 4 |
Unit cell lengths | 131.906, 131.906, 112.849 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.400 |
R-factor | 0.19 |
Rwork | 0.187 |
R-free | 0.25700 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1c3a |
RMSD bond length | 0.032 * |
RMSD bond angle | 2.639 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.600 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.061 | 0.404 |
Number of reflections | 36900 | |
<I/σ(I)> | 12.1 | 1.9 |
Completeness [%] | 97.6 | 98.8 |
Redundancy | 2.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 4.6 | pH 4.60 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | reservoir | sodium acetate | 100 (mM) | |
3 | 1 | reservoir | 200 (mM) | pH4.6 | |
4 | 1 | reservoir | MPD | 14 (%) |