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1UMR

Crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of Crotalus durissus terrificus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Spacegroup nameI 4
Unit cell lengths131.906, 131.906, 112.849
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.400
R-factor0.19
Rwork0.187
R-free0.25700

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1c3a
RMSD bond length0.032

*

RMSD bond angle2.639

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.600
High resolution limit [Å]2.4002.400
Rmerge0.0610.404
Number of reflections36900
<I/σ(I)>12.11.9
Completeness [%]97.698.8
Redundancy2.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

4.6pH 4.60
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirsodium acetate100 (mM)
31reservoir200 (mM)pH4.6
41reservoirMPD14 (%)

237735

PDB entries from 2025-06-18

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