Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1R9F

Crystal structure of p19 complexed with 19-bp small interfering RNA

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-ID-B
Synchrotron siteAPS
Beamline14-ID-B
Temperature [K]100
Detector technologyCCD
Collection date2003-07-18
DetectorMARRESEARCH
Wavelength(s)0.9791,0.9789,0.9562
Spacegroup nameH 3 2
Unit cell lengths91.249, 91.249, 148.630
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution15.000

*

- 1.850
R-factor0.212
Rwork0.212
R-free0.23600

*

Structure solution methodMAD
RMSD bond length0.004
RMSD bond angle0.900
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareCNS (1.1)
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.920
High resolution limit [Å]1.8501.850
Rmerge0.0600.725
Total number of observations194486

*

Number of reflections20413

*

1872

*

<I/σ(I)>44.82
Completeness [%]99.193.2
Redundancy9.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.6

*

20

*

ammonium sulfate, potassium chloride, HEPES-NaOH, dithiothreitol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.50
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111ammonium sulfate
211potassium chloride
311HEPES-NaOH
411dithiothreitol
511H2O
612ammonium sulfate
712potassium chloride
812H2O
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein125000 (nM)
21drop0.1 (M)
31dropHEPES-KOH5 (mM)
41drop10 (mM)pH7.6
51reservoirammonium sulfate1.2-1.6 (M)
61reservoirHEPES-NaOH0.1 (M)pH7.5

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon