1R9F
Crystal structure of p19 complexed with 19-bp small interfering RNA
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-ID-B |
Synchrotron site | APS |
Beamline | 14-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2003-07-18 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9791,0.9789,0.9562 |
Spacegroup name | H 3 2 |
Unit cell lengths | 91.249, 91.249, 148.630 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 15.000 * - 1.850 |
R-factor | 0.212 |
Rwork | 0.212 |
R-free | 0.23600 * |
Structure solution method | MAD |
RMSD bond length | 0.004 |
RMSD bond angle | 0.900 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | CNS (1.1) |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.920 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.060 | 0.725 |
Total number of observations | 194486 * | |
Number of reflections | 20413 * | 1872 * |
<I/σ(I)> | 44.8 | 2 |
Completeness [%] | 99.1 | 93.2 |
Redundancy | 9.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.6 * | 20 * | ammonium sulfate, potassium chloride, HEPES-NaOH, dithiothreitol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.50 |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | ammonium sulfate | ||
2 | 1 | 1 | potassium chloride | ||
3 | 1 | 1 | HEPES-NaOH | ||
4 | 1 | 1 | dithiothreitol | ||
5 | 1 | 1 | H2O | ||
6 | 1 | 2 | ammonium sulfate | ||
7 | 1 | 2 | potassium chloride | ||
8 | 1 | 2 | H2O |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 125000 (nM) | |
2 | 1 | drop | 0.1 (M) | ||
3 | 1 | drop | HEPES-KOH | 5 (mM) | |
4 | 1 | drop | 10 (mM) | pH7.6 | |
5 | 1 | reservoir | ammonium sulfate | 1.2-1.6 (M) | |
6 | 1 | reservoir | HEPES-NaOH | 0.1 (M) | pH7.5 |