1R19
Crystal Structure Analysis of S.epidermidis adhesin SdrG binding to Fibrinogen (Apo structure)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 298 |
Detector technology | IMAGE PLATE |
Collection date | 2002-02-06 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 44.385, 92.763, 93.916 |
Unit cell angles | 83.62, 76.06, 90.57 |
Refinement procedure
Resolution | 20.000 * - 3.500* |
R-factor | 0.251 |
Rwork | 0.251 |
R-free | 0.31900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1r17 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.510 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.620 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.084 * | |
Total number of observations | 57863 * | |
Number of reflections | 13739 * | |
<I/σ(I)> | 12.1 | 5.4 |
Completeness [%] | 97.3 | 96.4 |
Redundancy | 3.32 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | PEG 2000 MME, NaCl, MES, Pipes, Cacodylate , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG2000 MME | 50 (%) | |
2 | 1 | reservoir | 0.2 (M) |