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1R11

Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21 space group

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-3
Synchrotron siteSSRL
BeamlineBL9-3
Temperature [K]100
Detector technologyCCD
Collection date1998-11-06
DetectorADSC QUANTUM 4
Wavelength(s)1.000
Spacegroup nameP 1 21 1
Unit cell lengths52.412, 74.169, 84.855
Unit cell angles90.00, 106.13, 90.00
Refinement procedure
Resolution20.000

*

- 2.000

*

R-factor0.2369
Rwork0.231
R-free0.22900

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008

*

RMSD bond angle1.163

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000

*

High resolution limit [Å]2.000

*

2.000

*

Rmerge0.088

*

0.352

*

Number of reflections77465

*

Completeness [%]90.8

*

76.5

*

Redundancy3.89

*

2.46

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

6.6100 mM Na-cacodylic acid pH 6.5 - 6.8, 20 mM (NH4)2SO4, 300-400 mM NaCH2COOH, pH 6.6
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein60 (mg/ml)
21reservoirsodium cacodylate100 (mM)pH6.5-6.8
31reservoirammonium sulfate20 (mM)
41reservoirsodium acetate300-400 (mM)

218500

PDB entries from 2024-04-17

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