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1QYM

X-ray structure of human gankyrin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2003-05-19
DetectorMARRESEARCH
Wavelength(s)1.0000
Spacegroup nameP 41 21 2
Unit cell lengths116.373, 116.373, 74.399
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.800
Rwork0.187
R-free0.23300

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Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)SWISS-MODEL (PDB ENTRIES 1N1I 1n0r 1mj0 1N0Q)
RMSD bond length0.011
RMSD bond angle1.281
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.900
High resolution limit [Å]2.8002.800
Rmerge0.0720.620
Total number of observations169487

*

Number of reflections12978
<I/σ(I)>35.44
Completeness [%]99.899.3
Redundancy13
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP720

*

3.5M Na Formate , pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein18.3 (mg/ml)
21reservoirsodium formate3.5 (M)pH7.0

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PDB entries from 2024-05-01

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