1QY4
Crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with gluconate 6-phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RUH3R |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-07-05 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 36.000, 39.700, 74.700 |
Unit cell angles | 73.70, 78.50, 72.60 |
Refinement procedure
Resolution | 15.000 - 1.800 |
R-factor | 0.22 |
Rwork | 0.218 |
R-free | 0.26600 |
Structure solution method | Simple refinement |
Starting model (for MR) | 1qxj |
RMSD bond length | 0.016 |
RMSD bond angle | 1.720 * |
Data reduction software | CrystalClear ((MSC/RIGAKU)) |
Data scaling software | CrystalClear ((MSC/RIGAKU)) |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.800 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.056 | 0.355 |
Total number of observations | 89107 * | |
Number of reflections | 32924 | |
<I/σ(I)> | 8.8 | 2.7 |
Completeness [%] | 93.5 | 90.9 * |
Redundancy | 2.7 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 295 | 25% PEG 4000, 0.2M ammonium acetate, 0.1 M sodium acetate pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | PEG4000 | 25 (%(w/v)) | |
2 | 1 | reservoir | ammonium acetate | 0.2 (M) | |
3 | 1 | reservoir | sodium acetate | 0.1 (M) | pH5.6 |