1QRV
CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X12C |
Synchrotron site | NSLS |
Beamline | X12C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 1998-08-15 |
Detector | BRANDEIS - B4 |
Wavelength(s) | 0.9000,0.9211,0.92157,1.05 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.740, 53.797, 86.843 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.200 |
R-factor | 0.238 |
Rwork | 0.238 |
R-free | 0.28800 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.300 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS (0.5) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.052 | 0.198 |
Total number of observations | 94446 * | |
Number of reflections | 10672 | |
<I/σ(I)> | 24.2 | |
Completeness [%] | 98.0 | 97.9 |
Redundancy | 8.8 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.85 | 293 * | Murphy, F.V., (1999) Acta Crystallogr. D55, 1594. * |
1 | Vapor diffusion * | 7.85 | 293 * | Murphy, F.V., (1999) Acta Crystallogr. D55, 1594. * |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | PEG 3350, | ||
2 | 1 | 1 | TRIZMA-CL | ||
3 | 1 | 1 | NACL | ||
4 | 1 | 2 | PEG 3350, | ||
5 | 1 | 2 | TRIZMA-CL | ||
6 | 1 | 2 | NACL |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein solution | 5 (mM) | |
2 | 1 | reservoir | PEG4000 | 23 (%) | |
3 | 1 | reservoir | HEPES | 10 (mM) |