Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1QRV

CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12C
Synchrotron siteNSLS
BeamlineX12C
Temperature [K]100
Detector technologyCCD
Collection date1998-08-15
DetectorBRANDEIS - B4
Wavelength(s)0.9000,0.9211,0.92157,1.05
Spacegroup nameP 21 21 21
Unit cell lengths43.740, 53.797, 86.843
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.200
R-factor0.238
Rwork0.238
R-free0.28800
RMSD bond length0.009
RMSD bond angle1.300
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS (0.5)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.280
High resolution limit [Å]2.2002.200
Rmerge0.0520.198
Total number of observations94446

*

Number of reflections10672
<I/σ(I)>24.2
Completeness [%]98.097.9
Redundancy8.84.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

7.85293

*

Murphy, F.V., (1999) Acta Crystallogr. D55, 1594.

*

1Vapor diffusion

*

7.85293

*

Murphy, F.V., (1999) Acta Crystallogr. D55, 1594.

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111PEG 3350,
211TRIZMA-CL
311NACL
412PEG 3350,
512TRIZMA-CL
612NACL
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein solution5 (mM)
21reservoirPEG400023 (%)
31reservoirHEPES10 (mM)

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon