Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 110 |
Detector technology | IMAGE PLATE |
Collection date | 1997-03-02 |
Detector | MARRESEARCH |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 145.049, 119.700, 81.283 |
Unit cell angles | 90.00, 120.21, 90.00 |
Refinement procedure
Resolution | 15.000 - 2.400 |
R-factor | 0.233 |
Rwork | 0.233 |
R-free | 0.28700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1pvd |
RMSD bond length | 0.006 |
RMSD bond angle | 24.100 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (3.8) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 2.460 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.108 | 0.350 |
Number of reflections | 42140 | |
<I/σ(I)> | 12 | 5 |
Completeness [%] | 88.9 | 56 * |
Redundancy | 4.3 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 6 * | 8-14% PEG6000 20MM SODIUM CITRATE AT PH 5.7 1MM DTE, 5MM THDP, 5MM MGSO4 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5 (mg/ml) | |
10 | 1 | reservoir | 5 (mM) | ||
11 | 1 | reservoir | PEG6000 | 13-14 (%) | |
2 | 1 | drop | sodium citrate | 20 (mM) | |
3 | 1 | drop | DTE | 1 (mM) | |
4 | 1 | drop | ThDP | 5 (mM) | |
5 | 1 | drop | 5 (mM) | ||
6 | 1 | drop | pyruvamide | 320 (mM) | |
7 | 1 | reservoir | sodium citrate | 20 (mM) | |
8 | 1 | reservoir | DTE | 1 (mM) | |
9 | 1 | reservoir | ThDP | 5 (mM) |