1QOP
CRYSTAL STRUCTURE OF WILD-TYPE TRYPTOPHAN SYNTHASE COMPLEXED WITH INDOLE PROPANOL PHOSPHATE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-06-15 |
Detector | MARRESEARCH |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 182.200, 60.300, 67.400 |
Unit cell angles | 90.00, 94.70, 90.00 |
Refinement procedure
Resolution | 20.000 - 1.400 |
R-factor | 0.15 * |
Rwork | 0.150 |
R-free | 0.17700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2wsy |
RMSD bond length | 0.008 |
RMSD bond angle | 0.023 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | CNS |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.300 | 1.500 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.057 * | 0.258 * |
Total number of observations | 294137 * | |
Number of reflections | 133934 | |
<I/σ(I)> | 10.25 | 2.36 |
Completeness [%] | 93.2 | 80.8 |
Redundancy | 2.2 | 1.89 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | ENZYME SOLUTION: 10 MG/ML TRPS IN 50 MM BICINE PH 7.8, 1 MM EDTA, 5 MM DITHIOERYTHRITOL, 20 MUM PYRIDOXAL-5'-PHOSPHATE. RESERVOIR SOLUTION: 50 MM BICINE PH 7.8, 5 MM EDTA, 5 MM DITHIOERYTHRITOL, 0.1 MM PYRIDOXAL-5'-PHOSPHATE, 2 MM SPERMINE, 8-12 % PEG 8000. HANGING DROP GEOMETRY, CRYSTALLIZATION DROP CONSISTED AN INITIAL INDOLE PROPANOLE PHOSPHATE (IPL) CONCENTRATION OF 7 MM |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
10 | 1 | reservoir | spermine | 2 (mM) | |
11 | 1 | reservoir | 2 (mM) | ||
12 | 1 | reservoir | PEG8000 | 8-12 (%(w/v)) | |
2 | 1 | drop | Bicine | 50 (mM) | |
3 | 1 | drop | Na EDTA | 10 (mM) | |
4 | 1 | drop | di-thioerythritol | 1 (mM) | |
5 | 1 | drop | PLP | 0.020 (mM) | |
6 | 1 | reservoir | Bicine | 50 (mM) | |
7 | 1 | reservoir | di-thioerythritol | 5 (mM) | |
8 | 1 | reservoir | Na EDTA | 5 (mM) | |
9 | 1 | reservoir | PLP | 0.1 (mM) |