Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1QDQ

X-RAY CRYSTAL STRUCTURE OF BOVINE CATHEPSIN B-CA074 COMPLEX

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]293
Detector technologyIMAGE PLATE
DetectorRIGAKU RAXIS IIC
Spacegroup nameP 43 21 2
Unit cell lengths73.060, 73.060, 141.790
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution7.000 - 2.180
Rwork0.152
R-free0.18500

*

RMSD bond length0.098
RMSD bond angle25.700

*

Phasing softwarePHASES
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]2.310
High resolution limit [Å]2.1802.180
Rmerge0.067
Number of reflections32132
Completeness [%]82.176.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP3.5293sodium phosphate, sodium citrate, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 20K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20 (mg/ml)
21reservoirsodium citrate50 (mM)
31reservoirsodium phosphate2 (M)

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon