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1QCX

PECTIN LYASE B

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RUH2R
Temperature [K]295
Detector technologyAREA DETECTOR
DetectorXUONG-HAMLIN MULTIWIRE
Spacegroup nameP 21 21 2
Unit cell lengths83.700, 88.800, 42.284
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution7.000 - 1.700
R-factor0.162
Rwork0.162
R-free0.19800
Structure solution methodMOLECULAR REPLACEMENT AND HEAVY ATOMS
Starting model (for MR)FOR MOLECULAR REPLACEMENT: PARALLEL BETA HELIX OF PELE ALL AMINO ACIDS REPLACED WITH ALA UNLESS COMMON IN THE TWO PROTEINS; HEAVY ATOMS: PT HG
RMSD bond length0.010
RMSD bond angle1.400

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Data reduction softwareSDMS (SOFTWARE PACKAGE)
Data scaling softwareSDMS
Phasing softwarePHASES
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 Overall
Low resolution limit [Å]100.000
High resolution limit [Å]1.700
Rmerge0.054

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Total number of observations204035

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Number of reflections50124
<I/σ(I)>18.9
Completeness [%]73.8
Redundancy4.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

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7.5

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4

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pH 5.0
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropHEPES10 (mM)
21dropprotein
31reservoircitric acid0.1 (M)
41reservoirammonium sulfate1.6 (M)

222415

PDB entries from 2024-07-10

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