1QAE
THE ACTIVE SITE OF SERRATIA ENDONUCLEASE CONTAINS A CONSERVED MAGNESIUM-WATER CLUSTER
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 288 |
Detector technology | DIFFRACTOMETER |
Collection date | 1998-02-02 |
Detector | ENRAF-NONIUS FAST |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 106.700, 74.500, 68.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.050 |
R-factor | 0.167 * |
Rwork | 0.167 |
R-free | 0.21000 |
Starting model (for MR) | 1.4 ANGSTROM STRUCTURE OF THE SERRATIAL ENDONUCLEASE (CAI MILLER AND KRAUSE) WITH WATER AND ALTERNATE SIDE CHAIN CONFORMERS REMOVED AND THE SIDE CHAINS FOR THE ACTIVE SITE RESIDUES ARG 57 HIS 89 ASN 199 AND GLU 127 OMITTED |
RMSD bond length | 0.005 |
RMSD bond angle | 26.600 * |
Data reduction software | PROCOR |
Data scaling software | PROCOR |
Phasing software | X-PLOR (3.851) |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.000 | 2.100 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.025 | 0.045 |
Total number of observations | 93785 * | |
Number of reflections | 30574 | |
<I/σ(I)> | 40.87 | 18.9 |
Completeness [%] | 84.3 | 20.4 |
Redundancy | 3.1 | 1.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | other * | 4.6 * | 4 * | CRYSTALLIZATION METHOD: VAPOR DIFFUSION SITTING DROP CRYSTALLIZATION TEMPERATURE: 277 K CRYSTALLIZATION PH: 4.6 CRYSTALS WERE GROWN FROM PEG 3350, AMMONIUM SULFATE, SODIUM ACETATE, AND STORED IN A STABILIZATION SOLUTION CONTAINING 20% PEG 3000, 400mM GLYCINE, 40mM TRIS, PH8.2 (293 K), 20% PEG 3000, 10% PEG 400. THIS SOLUTION WAS EXCHANGED THREE TIMES TO MINIMIZE CARRY OVER FROM THE STORAGE SOLUTION. AFTER 3 DAYS IN THE MAGNESIUM STABILIZATION SOLUTION, THE CRYSTAL OF DIMENSION 0.4 X 0.4 X 0.3 MM**2 WAS MOUNTED IN A SILICONIZED SPECIAL GLASS CAPILLARY. , VAPOR DIFFUSION, SITTING DROP |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | PEG3350 | 15 (%(w/v)) | |
2 | 1 | 1 | ammonium sulfate | 0.2 (M) | |
3 | 1 | 1 | sodium acetate | 0.1 (M) |