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1QAE

THE ACTIVE SITE OF SERRATIA ENDONUCLEASE CONTAINS A CONSERVED MAGNESIUM-WATER CLUSTER

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]288
Detector technologyDIFFRACTOMETER
Collection date1998-02-02
DetectorENRAF-NONIUS FAST
Spacegroup nameP 21 21 2
Unit cell lengths106.700, 74.500, 68.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 2.050
R-factor0.167

*

Rwork0.167
R-free0.21000
Starting model (for MR)1.4 ANGSTROM STRUCTURE OF THE SERRATIAL ENDONUCLEASE (CAI MILLER AND KRAUSE) WITH WATER AND ALTERNATE SIDE CHAIN CONFORMERS REMOVED AND THE SIDE CHAINS FOR THE ACTIVE SITE RESIDUES ARG 57 HIS 89 ASN 199 AND GLU 127 OMITTED
RMSD bond length0.005
RMSD bond angle26.600

*

Data reduction softwarePROCOR
Data scaling softwarePROCOR
Phasing softwareX-PLOR (3.851)
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.0002.100
High resolution limit [Å]2.0502.050
Rmerge0.0250.045
Total number of observations93785

*

Number of reflections30574
<I/σ(I)>40.8718.9
Completeness [%]84.320.4
Redundancy3.11.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1other

*

4.6

*

4

*

CRYSTALLIZATION METHOD: VAPOR DIFFUSION SITTING DROP CRYSTALLIZATION TEMPERATURE: 277 K CRYSTALLIZATION PH: 4.6 CRYSTALS WERE GROWN FROM PEG 3350, AMMONIUM SULFATE, SODIUM ACETATE, AND STORED IN A STABILIZATION SOLUTION CONTAINING 20% PEG 3000, 400mM GLYCINE, 40mM TRIS, PH8.2 (293 K), 20% PEG 3000, 10% PEG 400. THIS SOLUTION WAS EXCHANGED THREE TIMES TO MINIMIZE CARRY OVER FROM THE STORAGE SOLUTION. AFTER 3 DAYS IN THE MAGNESIUM STABILIZATION SOLUTION, THE CRYSTAL OF DIMENSION 0.4 X 0.4 X 0.3 MM**2 WAS MOUNTED IN A SILICONIZED SPECIAL GLASS CAPILLARY. , VAPOR DIFFUSION, SITTING DROP
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111PEG335015 (%(w/v))
211ammonium sulfate0.2 (M)
311sodium acetate0.1 (M)

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