Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Q8A

Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+:L-Hcy complex, Se-Met)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]100
Detector technologyCCD
Collection date2003-03-12
DetectorMARRESEARCH
Wavelength(s)1.000
Spacegroup nameP 1 21 1
Unit cell lengths59.120, 86.190, 126.080
Unit cell angles90.00, 99.99, 90.00
Refinement procedure
Resolution20.000 - 1.650

*

R-factor0.225
Rwork0.214
R-free0.23900

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013

*

RMSD bond angle1.687

*

Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.780
High resolution limit [Å]1.650

*

1.700
Rmerge0.064

*

0.408

*

Number of reflections147923

*

Completeness [%]99.4

*

99.8

*

Redundancy5.8

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.74

*

propylene glycol, glycerol, PEG 8000, citrate, 1,2,3-heptanetriol, cadmium, pH 5.7, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11drop10 (mM)
21drop1,2,3-heptanetriol1.25 (%(w/v))
31reservoir1,2-propanediol25 (%)
41reservoirglycerol10 (%)
51reservoirPEG30005 (%)
61reservoirsodium citrate100 (mM)pH5.30

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon