1PO5
Structure of mammalian cytochrome P450 2B4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-11-11 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.98 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 57.090, 114.200, 133.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.700 - 1.600 |
R-factor | 0.217 |
R-free | 0.28900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1N6B WITH NON-IDENTICAL RESIDUES TRUNCATED AT C-BETA |
RMSD bond length | 0.008 * |
RMSD bond angle | 2.000 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | CCP4 |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 21.700 | 1.640 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.058 | 0.591 |
Total number of observations | 197894 * | |
Number of reflections | 57717 | |
<I/σ(I)> | 11.4 | 2.1 |
Completeness [%] | 99.5 | 98.8 |
Redundancy | 3.4 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 18 * | ethanol, sodium citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | P450 | 0.28 (mM) | |
10 | 1 | reservoir | ethanol | 15 (%) | |
11 | 1 | reservoir | sodium citrate | 0.1 (M) | pH5.5 |
2 | 1 | drop | Cymal-5 | 2.4 (mM) | |
3 | 1 | drop | ethanol | 7.5 (%) | |
4 | 1 | drop | sodium citrate | 50 (mM) | pH5.5 |
5 | 1 | drop | potassium phosphate | 25 (mM) | pH7.4 |
6 | 1 | drop | 250 (mM) | ||
7 | 1 | drop | EDTA | 0.5 (mM) | |
8 | 1 | drop | dithiothreitol | 0.1 (mM) | |
9 | 1 | drop | glycerol | 10 (%) |