1P9S
Coronavirus Main Proteinase (3CLpro) Structure: Basis for Design of anti-SARS Drugs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2000-01-01 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9801 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 53.356, 76.240, 73.477 |
Unit cell angles | 90.00, 103.70, 90.00 |
Refinement procedure
Resolution | 70.700 * - 2.540 |
R-factor | 0.20068 |
Rwork | 0.196 |
R-free | 0.28000 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1lvo |
RMSD bond length | 0.020 |
RMSD bond angle | 1.800 * |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.700 * | |
High resolution limit [Å] | 2.540 | 2.540 * |
Rmerge | 0.142 | 0.412 * |
Total number of observations | 216984 * | |
Number of reflections | 17709 | |
<I/σ(I)> | 9.1 | |
Completeness [%] | 98.2 * | |
Redundancy | 12.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 10 * | PEG 10000, 1,6-hexanediol, DTT, HEPES, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 7.1 (mg/ml) | |
10 | 1 | reservoir | dithiothreitol | 5 (mM) | |
11 | 1 | reservoir | dioxane | 12 (%) | |
12 | 1 | reservoir | HEPES | 100 (mM) | pH8.5 |
2 | 1 | drop | Tris-HCl | 11 (mM) | pH8.0 |
3 | 1 | drop | 200 (mM) | ||
4 | 1 | drop | EDTA | 0.1 (mM) | |
5 | 1 | drop | dithiothreitol | 1 (mM) | |
6 | 1 | drop | 1,6-hexanediol | 1 (%) | |
7 | 1 | drop | PEG10000 | 10 (%) | |
8 | 1 | reservoir | PEG10000 | 20 (%) | |
9 | 1 | reservoir | 1,6-hexanediol | 2 (%) |