1P60
Structure of human dCK complexed with 2'-Deoxycytidine and ADP, Space group C 2 2 21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-D |
Synchrotron site | APS |
Beamline | 14-BM-D |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2001-12-16 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 52.714, 132.808, 157.565 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 * - 1.960 |
R-factor | 0.16491 |
Rwork | 0.161 |
R-free | 0.20300 * |
Structure solution method | MAD |
RMSD bond length | 0.020 |
RMSD bond angle | 1.922 |
Data scaling software | XDS |
Phasing software | AMoRE |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.000 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.045 * | 0.291 * |
Total number of observations | 270973 * | |
Number of reflections | 39237 * | |
<I/σ(I)> | 23.7 | 3.3 |
Completeness [%] | 97.4 * | 67.8 * |
Redundancy | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 20 * | 0.95-1.0M citrate trisodium dihydrate, 100mM Hepes, 5mM deoxycytidine, 5mM ADP, 5mM MgCl2,5mM DTT, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | enzyme | 12 (mg/ml) | |
2 | 1 | drop | 5 (mM) | ||
3 | 1 | drop | HEPES | 20 (mM) | pH7.5 |
4 | 1 | drop | dithiothreitol | 5 (mM) | |
5 | 1 | drop | deoxycytidine | 100000 (nM) | |
6 | 1 | reservoir | trisodium citrate dihydrate | 0.95-1.0 (M) | |
7 | 1 | reservoir | HEPES | 100 (mM) | pH7.5 |