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1P60

Structure of human dCK complexed with 2'-Deoxycytidine and ADP, Space group C 2 2 21

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Temperature [K]110
Detector technologyCCD
Collection date2001-12-16
DetectorMARRESEARCH
Wavelength(s)0.9000
Spacegroup nameC 2 2 21
Unit cell lengths52.714, 132.808, 157.565
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000

*

- 1.960
R-factor0.16491
Rwork0.161
R-free0.20300

*

Structure solution methodMAD
RMSD bond length0.020
RMSD bond angle1.922
Data scaling softwareXDS
Phasing softwareAMoRE
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.000
High resolution limit [Å]1.9601.960
Rmerge0.045

*

0.291

*

Total number of observations270973

*

Number of reflections39237

*

<I/σ(I)>23.73.3
Completeness [%]97.4

*

67.8

*

Redundancy6.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.520

*

0.95-1.0M citrate trisodium dihydrate, 100mM Hepes, 5mM deoxycytidine, 5mM ADP, 5mM MgCl2,5mM DTT, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropenzyme12 (mg/ml)
21drop5 (mM)
31dropHEPES20 (mM)pH7.5
41dropdithiothreitol5 (mM)
51dropdeoxycytidine100000 (nM)
61reservoirtrisodium citrate dihydrate0.95-1.0 (M)
71reservoirHEPES100 (mM)pH7.5

229183

PDB entries from 2024-12-18

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