1P4C
High Resolution Structure of Oxidized Active Mutant of (S)-Mandelate Dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | CUSTOM-MADE |
Wavelength(s) | 0.97625 |
Spacegroup name | I 4 |
Unit cell lengths | 99.400, 99.400, 87.200 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 * - 1.350 |
R-factor | 0.184 |
Rwork | 0.184 |
R-free | 0.19400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1huv |
RMSD bond length | 0.009 |
RMSD bond angle | 1.540 * |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 500.000 * | 1.400 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.067 * | 0.282 * |
Number of reflections | 91731 * | |
Completeness [%] | 99.8 | 99.1 * |
Redundancy | 5.1 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 293 | Sukumar, N., (2001) Biochemistry, 40, 9870. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10-15 (mg/ml) | |
2 | 1 | drop | MES | 0.2 (M) | |
3 | 1 | drop | ammonium sulfate | 0.75 (%) | |
4 | 1 | drop | ethylene glycol | 10 (%) | |
5 | 1 | drop | FMN | 0.020 (mM) | |
6 | 1 | reservoir | 4.0 (M) | 1ml |