Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1P4C

High Resolution Structure of Oxidized Active Mutant of (S)-Mandelate Dehydrogenase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
DetectorCUSTOM-MADE
Wavelength(s)0.97625
Spacegroup nameI 4
Unit cell lengths99.400, 99.400, 87.200
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000

*

- 1.350
R-factor0.184
Rwork0.184
R-free0.19400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1huv
RMSD bond length0.009
RMSD bond angle1.540

*

Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]500.000

*

1.400
High resolution limit [Å]1.3501.350
Rmerge0.067

*

0.282

*

Number of reflections91731

*

Completeness [%]99.899.1

*

Redundancy5.1

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.2293Sukumar, N., (2001) Biochemistry, 40, 9870.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10-15 (mg/ml)
21dropMES0.2 (M)
31dropammonium sulfate0.75 (%)
41dropethylene glycol10 (%)
51dropFMN0.020 (mM)
61reservoir4.0 (M)1ml

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon