1OND
THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-04-15 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.033 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 170.250, 411.090, 695.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 * - 3.400 |
R-factor | 0.262 |
Rwork | 0.261 |
R-free | 0.31000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nkw |
RMSD bond length | 0.007 |
RMSD bond angle | 1.310 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CCP4 |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 3.460 |
High resolution limit [Å] | 3.400 | 3.400 |
Rmerge | 0.099 | 0.432 |
Number of reflections | 291247 | |
<I/σ(I)> | 5.4 | 1.4 |
Completeness [%] | 88.1 | 84.5 |
Redundancy | 2.4 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.8 * | 18 * | Harms, J.M., (2001) Cell (Cambridge,Mass.), 107, 679. * |
1 | Vapor diffusion * | 7.8 * | 18 * | Harms, J.M., (2001) Cell (Cambridge,Mass.), 107, 679. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | 10 (mM) | ||
2 | 1 | reservoir | 60 (mM) | ||
3 | 1 | reservoir | 5 (mM) | ||
4 | 1 | reservoir | HEPES | 10 (mM) | pH7.8 |