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1OGC

The Structure of Bacillus subtilis RbsD complexed with D-ribose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Temperature [K]295
Spacegroup nameC 1 2 1
Unit cell lengths123.654, 108.140, 83.357
Unit cell angles90.00, 128.92, 90.00
Refinement procedure
Resolution30.000 - 2.000
R-factor0.202
Rwork0.202
R-free0.23100
Structure solution methodDIRECT METHODS
RMSD bond length0.005
RMSD bond angle1.288
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000
High resolution limit [Å]2.000
Rmerge0.049

*

0.249

*

Total number of observations278205

*

Number of reflections57573
Completeness [%]94.385

*

Redundancy2.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.4

*

pH 6.00
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21dropTris-HCl20 (mM)pH7.4
31drop0.2 (M)
41dropdithiothreitol2 (mM)
51reservoirPEG400020 (%)
61reservoirisopropyl19 (%)
71reservoirsodium cacodylate100 (mM)pH6.5

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PDB entries from 2025-06-18

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