1OCS
Crystal structure of the yeast PX-doamin protein Grd19p (sorting nexin3) complexed to phosphatidylinosytol-3-phosphate.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 100 |
Collection date | 2002-02-15 |
Wavelength(s) | 0.9797,0.9803,0.98,0.9825 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 55.730, 55.730, 187.510 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 2.030 |
R-factor | 0.2173 |
Rwork | 0.217 |
R-free | 0.24700 * |
Structure solution method | MAD |
RMSD bond length | 0.006 |
RMSD bond angle | 22.700 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.080 |
High resolution limit [Å] | 2.030 | 2.030 |
Rmerge | 0.065 | 0.296 |
Total number of observations | 60571 * | |
Number of reflections | 17289 * | |
<I/σ(I)> | 13.6 | 2.5 |
Completeness [%] | 99.7 | 98.1 |
Redundancy | 5.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 6.8 | 293 * | 16% PEG 4000, 0.1M NA-HEPES PH7,5, pH 6.80 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 3 (mg/ml) | |
2 | 1 | reservoir | PEG4000 | 16 (%) | |
3 | 1 | reservoir | sodium HEPES | 0.1 (M) | pH7.5 |