1OBI
Crystal structure of the G130A mutant of Malonamidase E2 from Bradyrhizobium japonicum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | RIGAKU IMAGE PLATE |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 103.728, 94.762, 74.698 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 * - 2.200 |
R-factor | 0.172 |
Rwork | 0.172 |
R-free | 0.21200 * |
Structure solution method | DIRECT METHODS |
Starting model (for MR) | 1GR8 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.244 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 * | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.066 * | 0.254 * |
Total number of observations | 712191 * | |
Number of reflections | 38209 | |
<I/σ(I)> | 15 | 3 |
Completeness [%] | 90.7 | 79.3 |
Redundancy | 4 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7 | 20% POLYETHYLENE GLYCOL 1000, 0.1 M TRIS-HCL, PH 7.0 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | reservoir | PEG1000 | 20 (%) | |
3 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH7.0 |