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1OBI

Crystal structure of the G130A mutant of Malonamidase E2 from Bradyrhizobium japonicum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU IMAGE PLATE
Spacegroup nameP 21 21 2
Unit cell lengths103.728, 94.762, 74.698
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000

*

- 2.200
R-factor0.172
Rwork0.172
R-free0.21200

*

Structure solution methodDIRECT METHODS
Starting model (for MR)1GR8
RMSD bond length0.005
RMSD bond angle1.244

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.000

*

2.280
High resolution limit [Å]2.2002.200
Rmerge0.066

*

0.254

*

Total number of observations712191

*

Number of reflections38209
<I/σ(I)>153
Completeness [%]90.779.3
Redundancy42.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

720% POLYETHYLENE GLYCOL 1000, 0.1 M TRIS-HCL, PH 7.0
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirPEG100020 (%)
31reservoirTris-HCl0.1 (M)pH7.0

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PDB entries from 2024-07-24

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