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1O9P

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU IMAGE PLATE
Spacegroup nameP 21 21 2
Unit cell lengths103.581, 94.790, 75.065
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.800
R-factor0.192
Rwork0.192
R-free0.22600
Structure solution methodDIRECT METHODS
Starting model (for MR)1GR9
RMSD bond length0.005
RMSD bond angle1.291
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.840
High resolution limit [Å]1.800

*

1.780
Rmerge0.053

*

0.198

*

Total number of observations514152

*

Number of reflections71433
<I/σ(I)>22.234
Completeness [%]94.384.7
Redundancy42.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

720% POLYETHYLENE GLYCOL 1000, 100 MM TRIS, PH 7.0, 15 MM MALONATE
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirPEG100020 (%)
31reservoirTris-HCl0.1 (M)pH7.0

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PDB entries from 2024-04-24

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