1O4V
Crystal structure of the catalytic subunit of a phosphoribosylaminoimidazole mutase (tm0446) from thermotoga maritima at 1.77 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2003-02-03 |
Detector | ADSC QUANTUM 315 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 103.249, 103.249, 65.445 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.370 - 1.770 |
R-factor | 0.1514 |
Rwork | 0.150 |
R-free | 0.18200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qcz |
RMSD bond length | 0.016 |
RMSD bond angle | 1.460 * |
Data reduction software | MOSFLM |
Data scaling software | SCALA (4.2)) |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.370 | 1.820 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.072 * | 0.452 * |
Total number of observations | 119908 * | |
Number of reflections | 16698 * | |
<I/σ(I)> | 19.3 | 2.1 |
Completeness [%] | 95.4 | 73.8 |
Redundancy | 7.2 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 7.9 * | 293 | 2M ammonium sulfate, 0.1M tri-sodium citrate dihydrate pH 5.6, 0.2M potassium sodium tartrate tetrahydrate , VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Tris | 20 (mM) | pH7.9 |
2 | 1 | drop | 150 (mM) | ||
3 | 1 | drop | TCEP | 0.25 (mM) | |
4 | 1 | drop | protein | 18 (mg/ml) | |
5 | 1 | reservoir | ammonium sulfate | 2.0 (M) | |
6 | 1 | reservoir | sodium potassium tartrate | 0.2 (M) | |
7 | 1 | reservoir | Tris | 0.1 (M) | pH5.6 |