1O08
Structure of Pentavalent Phosphorous Intermediate of an Enzyme Catalyzed Phosphoryl transfer Reaction observed on cocrystallization with Glucose 1-phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2002-02-22 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.939, 54.297, 104.680 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 * - 1.200 |
R-factor | 0.1408 |
Rwork | 0.141 |
R-free | 0.17900 * |
Structure solution method | AB INITIO |
Starting model (for MR) | SeMeth MAD model of the same protein to 1.7 angstrom |
RMSD bond length | 0.009 * |
RMSD bond angle | 1.120 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHELX |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 9999.000 * | 1.220 |
High resolution limit [Å] | 1.200 | 1.200 |
Rmerge | 0.043 | 0.080 * |
Total number of observations | 699466 * | |
Number of reflections | 66304 * | |
<I/σ(I)> | 32.7 | 15.7 |
Completeness [%] | 86.9 | 54.4 |
Redundancy | 10.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 18 * | 16% PEG 3350, 0.1M Ammonium Fluoride, 4mM b-D-Glucose-1-phosphate, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | potassium-HEPES | 1 (mM) | pH7.5 |
2 | 1 | drop | 10 (mM) | ||
3 | 1 | drop | dithiothreitol | 1 (mM) | |
4 | 1 | reservoir | ammonium fluoride | 0.1 (M) | |
5 | 1 | reservoir | PEG3350 | 16 (%(w/v)) |