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1O03

Structure of Pentavalent Phosphorous Intermediate of an Enzyme Catalyzed Phosphoryl transfer Reaction observed on cocrystallization with Glucose 6-phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-C
Synchrotron siteAPS
Beamline14-BM-C
Temperature [K]93
Detector technologyCCD
Collection date2002-02-22
DetectorADSC QUANTUM 4
Wavelength(s)0.9
Spacegroup nameP 21 21 21
Unit cell lengths37.311, 54.173, 104.446
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution100.000

*

- 1.400
R-factor0.22
Rwork0.170
R-free0.19440

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)SeMeth MAD model of the same protein to 1.7 angstrom
RMSD bond length0.005
RMSD bond angle1.190

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]9999.000

*

1.450
High resolution limit [Å]1.4001.400
Rmerge0.073

*

0.130

*

Total number of observations983130

*

Number of reflections66302

*

<I/σ(I)>34.915.7
Completeness [%]98.0

*

88.1

*

Redundancy14.85
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.918

*

16% PEG 3350, 0.1M Ammonium Fluoride, 4mM b-D-Glucose6phosphate, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11droppotassium-HEPES1 (mM)pH7.5
21drop10 (mM)
31dropdithiothreitol1 (mM)
41reservoirammonium fluoride0.1 (M)
51reservoirPEG335016 (%(w/v))

219140

PDB entries from 2024-05-01

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